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"websockets>=12.0", "aiosqlite>=0.19.0", "psycopg>=3.1.18", + "plotly>=5.20.0", + "matplotlib>=3.8.3", ] requires-python = ">=3.11,<4" readme = "README.md" diff --git a/src/gisaf/_version.py b/src/gisaf/_version.py index 0d845e3..effc3d6 100644 --- a/src/gisaf/_version.py +++ b/src/gisaf/_version.py @@ -1 +1 @@ -__version__: str = '2023.4.dev51+g15fe7fa.d20240318' \ No newline at end of file +__version__: str = '2023.4.dev53+gd539a72.d20240320' \ No newline at end of file diff --git a/src/gisaf/api/dashboard.py b/src/gisaf/api/dashboard.py index da828bc..2050287 100644 --- a/src/gisaf/api/dashboard.py +++ b/src/gisaf/api/dashboard.py @@ -1,6 +1,7 @@ import logging from pathlib import Path from json import dumps +from typing import Annotated from fastapi import Depends, APIRouter, HTTPException, status, responses from sqlalchemy.orm import selectinload @@ -14,8 +15,8 @@ from gisaf.database import fastapi_db_session as db_session from gisaf.models.authentication import User from gisaf.models.dashboard import ( DashboardPage, DashboardPageSection, - DashboadPageSectionType, DashboardPage_, - DashboardGroup, DashboardHome, + DashboardPageMetaData, + DashboardGroup, DashboardHome, Dashboard, DashboardSection ) from gisaf.models.misc import NotADataframeError from gisaf.security import get_current_active_user @@ -46,10 +47,12 @@ async def get_groups( ) -> list[DashboardGroup]: query = select(DashboardPage) data = await db_session.exec(query) - groups: dict[str, DashboardPage_] = {} + groups: dict[str, DashboardPageMetaData] = {} for page in data.all(): - page_field = DashboardPage_(name=page.name, group=page.group, - description=page.description) + page_field = DashboardPageMetaData(name=page.name, group=page.group, + description=page.description, + viewable_role=page.viewable_role + ) group = groups.get(page.group) if group is None: group = DashboardGroup(name=page.group, pages=[page_field]) @@ -80,9 +83,10 @@ async def get_home() -> DashboardHome: async def get_dashboard_page(group: str, name: str, db_session: db_session, user: User = Depends(get_current_active_user), - ) -> DashboardPage_: - query1 = select(DashboardPage).where((DashboardPage.name==name) - & (DashboardPage.group==group)) + ) -> Dashboard: + query1 = select(DashboardPage).\ + options(selectinload(DashboardPage.sections)).\ + where((DashboardPage.name==name) & (DashboardPage.group==group)) data1 = await db_session.exec(query1) page = data1.one_or_none() if not page: @@ -98,7 +102,7 @@ async def get_dashboard_page(group: str, name: str, username = user.username if user is not None else "Anonymous" logger.info(f'{username} tried to access dashboard page {name}') raise HTTPException(status.HTTP_401_UNAUTHORIZED) - dp = DashboardPage_( + dp = Dashboard( name=page.name, group=page.group, description=page.description, @@ -111,7 +115,7 @@ async def get_dashboard_page(group: str, name: str, for p in page.expanded_panes.split(',') ] if page.expanded_panes else [], sections=[ - DashboadPageSectionType( + DashboardSection( name=dps.name, plot=dps.get_plot_url() ) @@ -126,7 +130,7 @@ async def get_dashboard_page(group: str, name: str, if isinstance(df, gpd.GeoDataFrame): gdf = pd.DataFrame(df.drop(columns=['geometry'])) df = gdf - dp.dfData = df.to_json(orient='table', double_precision=2) + dp.dfData = df.reset_index().to_dict(orient='records') except NotADataframeError: logger.warning(f'Dashboard: cannot read dataframe for page {page.name}') except Exception as err: diff --git a/src/gisaf/api/main.py b/src/gisaf/api/main.py index 612ff56..7366ca2 100644 --- a/src/gisaf/api/main.py +++ b/src/gisaf/api/main.py @@ -21,7 +21,7 @@ from gisaf.models.info import (LegendItem, ModelAction, ModelInfo, TagActions) from gisaf.models.measures import MeasuresItem from gisaf.models.survey import Equipment, SurveyMeta, Surveyor -from gisaf.config import Survey, conf +from gisaf.config import conf from gisaf.models.bootstrap import BootstrapData from gisaf.models.store import Store, StoreNameOnly from gisaf.models.project import Project @@ -29,14 +29,12 @@ from gisaf.models.authentication import UserRoleLink #, ACL from gisaf.database import pandas_query, fastapi_db_session as db_session from gisaf.security import ( Token, - authenticate_user, get_current_user, create_access_token, + authenticate_user, get_current_active_user, create_access_token, ) from gisaf.registry import registry, NotInRegistry from gisaf.custom_store_base import BaseStore from gisaf.redis_tools import store as redis_store -from gisaf.models.info import ( - FeatureInfo, InfoItem, Attachment, InfoCategory -) +from gisaf.models.info import FeatureInfo from gisaf.live_utils import get_live_feature_info from gisaf.plugins import manager as plugin_manager, NoSuchAction from gisaf.utils import gisTypeSymbolMap @@ -53,7 +51,7 @@ api = APIRouter( @api.get('/bootstrap') async def bootstrap( - user: Annotated[UserRead, Depends(get_current_user)]) -> BootstrapData: + user: Annotated[UserRead, Depends(get_current_active_user)]) -> BootstrapData: return BootstrapData(user=user) @@ -78,7 +76,7 @@ async def login_for_access_token( @api.get('/logout') async def logout( - user: Annotated[UserRead, Depends(get_current_user)]): + user: Annotated[UserRead, Depends(get_current_active_user)]): logger.info(f'{user.username} ({user.id}) logged out') @@ -100,7 +98,7 @@ async def get_roles( @api.get('/acls') async def get_acls(db_session: db_session, - user: Annotated[User, Depends(get_current_user)]) -> list[UserRoleLink]: + user: Annotated[User, Depends(get_current_active_user)]) -> list[UserRoleLink]: """New: ACLs returned as UserRoleLink""" if not user or not user.has_role('manager'): raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED) diff --git a/src/gisaf/models/dashboard.py b/src/gisaf/models/dashboard.py index 53d8e40..76c2068 100644 --- a/src/gisaf/models/dashboard.py +++ b/src/gisaf/models/dashboard.py @@ -3,8 +3,10 @@ from pickle import loads from pathlib import Path from datetime import datetime import logging +# from typing import Any -from sqlmodel import Field, Relationship, String +from matplotlib.figure import Figure +from sqlmodel import Field, Relationship, String, JSON from pydantic import BaseModel import pandas as pd @@ -13,12 +15,10 @@ from gisaf.models.metadata import gisaf from gisaf.models.models_base import Model from gisaf.models.misc import NotADataframeError +import matplotlib.pyplot as plt + logger = logging.getLogger(__name__) -try: - import matplotlib.pyplot as plt -except ImportError: - plt = None # type: ignore class DashboardPageSource(Model, table=True): @@ -34,17 +34,26 @@ class DashboardPageCommon: Base class for DashboardPage and DashboardPageSection, where some methods are common, eg. attachments """ + name: str + df: bytes + plot: bytes + #plot: dict[str, Any] | None = Field(sa_type=JSON(none_as_null=True)) # type: ignore + attachment: str | None + html: str | None = None - def get_attachment_url(self): - ## Serve through web front-end (nginx static file) - if not self.attachment: - return - base_storage_url = conf.dashboard.base_storage_url - if not base_storage_url: - base_storage_url = '/dashboard-attachment/' - return f'{base_storage_url}{self.group}/{self.attachment}' + def ensure_dir_exists(self): + raise NotImplementedError() - def save_plot(self, plot): + def get_plot_file_path(self) -> Path: + raise NotImplementedError() + + def get_attachment_file_name(self) -> str: + raise NotImplementedError() + + def get_plot_file_name(self): + raise NotImplementedError() + + def save_plot(self, plot: plt.Axes | plt.Figure): # type: ignore """ Render the matplotlib plot (or figure) and save it in the filesystem :param plot: matplotlib plot or figure... @@ -53,15 +62,14 @@ class DashboardPageCommon: self.ensure_dir_exists() ## Different types of figures supported - fig = None - if plt: - if isinstance(plot, plt.Axes): - fig = plot.figure - elif isinstance(plot, plt.Figure): - fig = plot - if fig: - fig.savefig(self.get_plot_file_path(), bbox_inches='tight') - plt.close(fig) + fig: Figure | None = None + if isinstance(plot, plt.Axes): # type: ignore + fig = plot.figure # type: ignore + elif isinstance(plot, plt.Figure): # type: ignore + fig = plot + if fig: + fig.savefig(self.get_plot_file_path(), bbox_inches='tight') + plt.close(fig) if plot and not fig: logger.warning('Cannot save dashboard attachment (unknown attachment type)') @@ -71,7 +79,7 @@ class DashboardPageCommon: #f'in {self.get_attachment_file_name()}') return self.get_plot_file_name() - def save_attachment(self, attached, name=None): + def save_attachment(self, attached, name=None) -> str | None: """ Save the attachment in the filesystem :param attached: matplotlib plot or figure... @@ -84,11 +92,11 @@ class DashboardPageCommon: self.ensure_dir_exists() ## Different types of figures supported - fig = None + fig: Figure | None = None if plt: - if isinstance(attached, plt.Axes): - fig = attached.figure - elif isinstance(attached, plt.Figure): + if isinstance(attached, plt.Axes): # type: ignore + fig = attached.figure # type: ignore + elif isinstance(attached, plt.Figure): # type: ignore fig = attached if fig: fig.savefig(self.get_attachment_file_name(), bbox_inches='tight') @@ -96,7 +104,7 @@ class DashboardPageCommon: if attached and not fig: logger.warning('Cannot save dashboard attachment (unknown attachment type)') - return + return None #logger.info(f'Saved attachment of dashboard page {self.group}/{self.name} ' #f'in {self.get_attachment_file_name()}') @@ -114,10 +122,18 @@ class DashboardPageCommon: raise NotADataframeError() def get_plot(self): - return loads(self.plot) + if self.plot is not None: + return loads(self.plot) -class DashboardPage(Model, DashboardPageCommon, table=True): +class DashboardPageMetaData(BaseModel): + name: str + group: str + description: str + viewable_role: str | None = None + + +class DashboardPage(Model, DashboardPageCommon, DashboardPageMetaData, table=True): __tablename__ = 'dashboard_page' # type: ignore __table_args__ = gisaf.table_args @@ -125,19 +141,12 @@ class DashboardPage(Model, DashboardPageCommon, table=True): menu = 'Dashboard' id: int = Field(primary_key=True) - name: str - notebook: str - group: str - description: str - attachment: str - html: str - viewable_role: str - df: bytes - plot: bytes - source_id: int = Field(foreign_key=gisaf.table('dashboard_page_source.id')) - time: datetime - expanded_panes: str + time: datetime | None = Field(default_factory=datetime.now) + notebook: str | None = None + source_id: int | None = Field(foreign_key=gisaf.table('dashboard_page_source.id')) + expanded_panes: str | None source: DashboardPageSource = Relationship() + sections: list['DashboardPageSection'] = Relationship() def __str__(self): return f'{self.group:s}/{self.name:s}' @@ -169,6 +178,15 @@ class DashboardPage(Model, DashboardPageCommon, table=True): else: raise UserWarning('Cannot save attachment: no notebook/base_storage_dir in gisaf config') + def get_attachment_url(self): + ## Serve through web front-end (nginx static file) + if not self.attachment: + return + base_storage_url = conf.dashboard.base_storage_url + if not base_storage_url: + base_storage_url = '/dashboard-attachment/' + return f'{base_storage_url}{self.group}/{self.attachment}' + def get_notebook_url(self): if self.notebook: base_url = conf.dashboard.base_source_url @@ -188,13 +206,9 @@ class DashboardPageSection(Model, DashboardPageCommon, table=True): id: str = Field(primary_key=True) name: str dashboard_page_id: int = Field(foreign_key=gisaf.table('dashboard_page.id')) - dashboard_page: DashboardPage = Relationship() + dashboard_page: DashboardPage = Relationship(back_populates='sections') description: str - attachment: str - html: str - df: bytes - plot: str def __str__(self): return f'{self.name} for dashboard page #{self.dashboard_page_id}' @@ -266,28 +280,28 @@ class Widget(Model, table=True): menu = 'Dashboard' -class DashboadPageSectionType(BaseModel): +class DashboardSection(BaseModel): name: str plot: str -class DashboardPage_(BaseModel): +class Dashboard(BaseModel): name: str group: str description: str time: datetime | None = Field(default_factory=datetime.now) html: str | None = None attachment: str | None = None - dfData: str | None = None + dfData: list = [] plotData: str | None = None notebook: str | None = None expandedPanes: list[str] | None = None - sections: list[DashboadPageSectionType] | None = None + sections: list[DashboardSection] | None = None class DashboardGroup(BaseModel): name: str - pages: list[DashboardPage_] + pages: list[DashboardPageMetaData] class DashboardHome(BaseModel):