CI: switch to Woodpecker

Tag container image with playbook
Importable module with python -m treetrail

.containerignore

@@ -1,5 +1,4 @@
 .venv
-.git
 dist
 .pytest_cache
 .forgejo

.forgejo/workflows/build.yaml

@@ -1,60 +0,0 @@
-on:
-  push:
-  workflow_dispatch:
-    inputs:
-      verbose:
-        description: "Verbose"
-        required: false
-        default: false
-        type: boolean
-
-jobs:
-  build:
-    runs-on: container
-    container:
-      image: tiptop:5000/treetrail-backend-ci
-      volumes:
-        - "uv_cache:/root/.cache/uv"
-        - "ca-cert:/etc/containers/certs.d"
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Git unshallow - get all history from Git to get the tag for the computation of the version
-        run: git pull --unshallow
-
-      - name: Get the version from git
-        id: version
-        run: echo "version=$(git describe --dirty --tags)" >> $GITHUB_OUTPUT
-
-      - name: Install app with 'uv pip install'
-        run: uv pip install --python=$UV_PROJECT_ENVIRONMENT --no-deps .
-
-      - name: Workaround for bug of podman-login
-        run: |
-          mkdir -p $HOME/.docker
-          echo "{ \"auths\": {} }" > $HOME/.docker/config.json
-
-      - name: Log in to the container registry (with another workaround)
-        uses: actions/podman-login@v1
-        with:
-          registry: ${{ vars.REGISTRY }}
-          username: ${{ secrets.REGISTRY_USER }}
-          password: ${{ secrets.REGISTRY_PASSWORD }}
-          auth_file_path: /tmp/auth.json
-
-      - name: Build the container image
-        uses: actions/buildah-build@v1
-        with:
-          image: treetrail-backend
-          oci: true
-          labels: treetrail-backend
-          tags: ${{ steps.version.outputs.version }}
-          containerfiles: |
-            ./Containerfile
-
-      - name: Push the image to the registry
-        uses: actions/push-to-registry@v2
-        with:
-          registry: "docker://${{ vars.REGISTRY }}"
-          image: treetrail-backend
-          tags: ${{ steps.version.outputs.version }}

.forgejo/workflows/test.yaml

@@ -1,34 +0,0 @@
-on:
-  push:
-  workflow_dispatch:
-    inputs:
-      verbose:
-        description: "Verbose"
-        required: false
-        default: false
-        type: boolean
-
-jobs:
-  test:
-    runs-on: container
-    container:
-      image: tiptop:5000/treetrail-backend-ci
-      volumes:
-        - "uv_cache:/root/.cache/uv"
-        - "ca-cert:/etc/containers/certs.d"
-    services:
-      treetrail-database:
-        image: treetrail-database
-    steps:
-      - name: Echo env
-        if: ${{ inputs.verbose }}
-        run: |
-          echo '${{ toJSON(env) }}'
-
-      - uses: actions/checkout@v4
-
-      - name: Install app with 'uv pip install'
-        run: uv pip install --python=$UV_PROJECT_ENVIRONMENT --no-deps .
-
-      - name: Run tests (API call)
-        run: pytest -s tests/basic.py

.woodpecker/build.yaml

@@ -0,0 +1,70 @@
+when:
+  - event: manual
+  - event: tag
+
+depends_on:
+  - test
+
+steps:
+  python_sync:
+    image: code.philo.ydns.eu/philorg/uv
+    volumes:
+      - uv-cache:/uv-cache
+    environment:
+      UV_CACHE_DIR: /uv-cache
+      UV_LINK_MODE: copy
+    commands:
+      - uv sync
+
+  python_build:
+    image: code.philo.ydns.eu/philorg/uv
+    volumes:
+      - uv-cache:/uv-cache
+    environment:
+      UV_CACHE_DIR: /uv-cache
+      UV_LINK_MODE: copy
+    commands:
+      - uv build --wheel
+      - uv cache prune --ci
+
+  python_publish:
+    image: code.philo.ydns.eu/philorg/uv
+    volumes:
+      - uv-cache:/uv-cache
+    environment:
+      UV_CACHE_DIR: /uv-cache
+      UV_LINK_MODE: copy
+    environment:
+      OWNER: philorg
+      REGISTRY_URL: https://code.philo.ydns.eu
+      REGISTRY_TOKEN:
+        from_secret: registry_token
+    commands:
+      - uv publish --publish-url $REGISTRY_URL/api/packages/$OWNER/pypi --token $REGISTRY_TOKEN dist/*.whl
+    failure: ignore
+
+  container_build_publish:
+    image: quay.io/podman/stable:latest
+    # Caution: This image is built daily. It might fill up your image store quickly.
+    #pull: true
+    volumes:
+      - containers:/var/lib/containers
+      - uv-cache:/uv-cache
+    # Fill in the trusted checkbox in Woodpecker's settings as well
+    privileged: true
+    environment:
+      UV_CACHE_DIR: /uv-cache
+      UV_LINK_MODE: copy
+      registry: code.philo.ydns.eu
+      org: philorg
+      container_name: treetrail-backend
+      registry_token:
+        from_secret: registry_token
+    commands:
+      # Login at the registry
+      - podman login -u __token__ --password $registry_token $registry
+      # Build the container image
+      - podman build --volume=/var/lib/containers:/var/lib/containers --tag $registry/$org/$container_name:latest --tag $registry/$org/$container_name:$CI_COMMIT_TAG .
+      # Push the image
+      - podman push $registry/$org/$container_name:latest
+      - podman push $registry/$org/$container_name:$CI_COMMIT_TAG

.woodpecker/test.yaml

@@ -0,0 +1,21 @@
+when:
+  - event: push
+    branch: main
+  - event: manual
+  - event: tag
+
+steps:
+  sync:
+    image: code.philo.ydns.eu/philorg/uv
+    volumes:
+      - uv-cache:/uv-cache
+    environment:
+      UV_CACHE_DIR: /uv-cache
+      UV_LINK_MODE: copy
+    commands:
+      - uv sync
+
+  test:
+    image: code.philo.ydns.eu/philorg/uv
+    commands:
+      - .venv/bin/pytest -s tests/basic.py

Containerfile

@@ -1,19 +1,13 @@
-# Build: podman build -t treetrail-backend-base -f Containerfile.base
+FROM docker.io/library/python:latest
 
-FROM tiptop:5000/treetrail-backend-deps
+COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /usr/local/bin/
 
-ENV PYTHONPATH $UV_PROJECT_ENVIRONMENT/lib/python3.12/site-packages
+COPY . /app
 
-COPY . /src
+# Sync the project into a new environment, using the frozen lockfile
+WORKDIR /app
 
-#RUN --mount=type=cache,target=/root/.cache \
+RUN uv pip install --system .
-#  cd /src && \
-#  uv sync --locked --no-dev --no-editable
-
-RUN uv pip install \
-  --python=$UV_PROJECT_ENVIRONMENT \
-  --no-deps \
-  /src
 
 CMD [ \
   "uvicorn", "treetrail.application:app", \

Containerfile.ci

@@ -1,6 +1,6 @@
-# Build: podman build -t treetrail-backend-ci -f Containerfile.ci
+# Build: podman build -t code.philo.ydns.eu/philorg/treetrail-backend-ci -f Containerfile.ci
 
-FROM tiptop:5000/python-ci
+FROM code.philo.ydns.eu/philorg/python-ci
 
 COPY ./pyproject.toml ./README.md ./uv.lock /_lock/
 

Containerfile.database

@@ -0,0 +1,4 @@
+FROM docker.io/postgis/postgis:17-3.5-alpine
+
+ENV POSTGRES_USER treetrail
+ENV POSTGRES_PASSWORD treetrail

Containerfile.deps

@@ -1,6 +1,6 @@
-# Build: podman build -t treetrail-backend-deps -f Containerfile.deps
+# Build: podman build -t code.philo.ydns.eu/philorg/treetrail-backend-deps -f Containerfile.deps
 
-FROM tiptop:5000/trixie_python
+FROM code.philo.ydns.eu/philorg/trixie_python
 
 COPY ./pyproject.toml ./README.md ./uv.lock /_lock/
 

Containerfile.for_runner

@@ -1,15 +0,0 @@
-# FIXME: do not use hardcoded registry
-FROM tiptop:5000/trixie_python
-
-WORKDIR /app
-
-ENV PYTHONPATH $UV_PROJECT_ENVIRONMENT/lib/python3.12/site-packages
-
-COPY --from=tiptop:5000/treetrail_backend_deps /app /app
-#COPY --from=tiptop:5000/treetrail_backend_deps /var/lib/treetrail/ /var/lib/treetrail
-COPY ./treetrail ./pyproject.toml ./README.md ./
-
-# Instances should override the prod.yaml file
-#COPY ./prod.yaml /etc/treetrail/prod.yaml
-
-CMD ["uvicorn", "treetrail.application:app", "--port", "8081", "--log-config", "logging.yaml", "--host", "0.0.0.0"]

Containerfile.full_copy

@@ -1,4 +1,5 @@
-FROM localhost/trixie_python
+# Build: podman build -t code.philo.ydns.eu/philorg/treetrail-backend-full -f Containerfile.full_copy
+FROM code.philo.ydns.eu/philorg/trixie_python
 
 ENV PYTHONPATH $UV_PROJECT_ENVIRONMENT/lib/python3.12/site-packages
 ENV PATH=/app/bin:$PATH

Containerfile.trixie_python

@@ -1,6 +1,6 @@
-# Build: podman build -t trixie_python -f Containerfile.trixie_python 
+# Build: podman build -t code.philo.ydns.eu/philorg/trixie_python -f Containerfile.trixie_python 
 
-FROM debian:trixie-slim
+FROM docker.io/library/debian:trixie-slim
 
 RUN <<EOT
 apt-get update -qy
@@ -15,9 +15,9 @@ EOT
 COPY --from=ghcr.io/astral-sh/uv:latest /uv /usr/local/bin/uv
 
 ENV UV_LINK_MODE=copy \
-    UV_COMPILE_BYTECODE=1 \
+  UV_COMPILE_BYTECODE=1 \
-    UV_PYTHON_DOWNLOADS=never \
+  UV_PYTHON_DOWNLOADS=never \
-    #UV_PYTHON=python3.12 \
+  #UV_PYTHON=python3.12 \
-    UV_PROJECT_ENVIRONMENT=/app \
+  UV_PROJECT_ENVIRONMENT=/app \
-    PYTHONPATH=/app/lib/python3.12/site-packages \
+  PYTHONPATH=/app/lib/python3.12/site-packages \
-    PATH=/app/bin:$PATH
+  PATH=/app/bin:$PATH

README.md

@@ -1,3 +1,6 @@
 *Tree Trail* is a fun and pedagogic tool to discover the trails and trees around.
 
-This is the server (back-end), written in Python.
+This is the server (back-end), written in Python.
+
+[![status-badge](https://code.philo.ydns.eu/woodpecker/api/badges/20/status.svg)](https://code.philo.ydns.eu/woodpecker/repos/20)
+

build.yaml

@@ -1,11 +1,11 @@
-- name: Build containers
+- name: Build containers images
   hosts: localhost
   gather_facts: false
   vars:
-    force: false
     force_rm: false
     cache: false
-    repository: tiptop:5000
+    repository: code.philo.ydns.eu
+    organisation: philorg
 
   tasks:
     #- name: Read conf
@@ -13,13 +13,56 @@
     #    file: prod.yaml
     #    name: conf
 
+    - name: Build the database image
+      tags: db
+      containers.podman.podman_image:
+        name: treetrail-database
+        state: build
+        path: "{{ playbook_dir }}"
+        build:
+          format: oci
+          force_rm: "{{ force_rm }}"
+          cache: "{{ cache }}"
+          file: Containerfile.database
+        push: true
+        push_args:
+          dest: "{{ repository }}/{{ organisation }}"
+
     - name: Using the variables
       ansible.builtin.debug:
         var: force_rm
 
+    - name: Get the version from git
+      tags:
+        - ci
+        - deps
+        - backend
+      command: git describe --dirty --tags
+      register: version
+      args:
+        chdir: "{{ playbook_dir }}"
+
+    - name: Build the base CI image
+      tags: ci
+      containers.podman.podman_image:
+        name: treetrail-backend-ci
+        tag: "{{ version.stdout }}"
+        state: build
+        path: "{{ playbook_dir }}"
+        build:
+          format: oci
+          force_rm: "{{ force_rm }}"
+          cache: "{{ cache }}"
+          file: Containerfile.ci
+        push: true
+        push_args:
+          dest: "{{ repository }}/{{ organisation }}"
+
     - name: Build the base image, only with python dependencies
+      tags: deps
       containers.podman.podman_image:
         name: treetrail-backend-deps
+        tag: "{{ version.stdout }}"
         state: build
         path: "{{ playbook_dir }}"
         build:
@@ -29,11 +72,13 @@
           file: Containerfile.deps
         push: true
         push_args:
-          dest: "{{ repository }}/treetrail-backend-deps"
+          dest: "{{ repository }}/{{ organisation }}"
 
     - name: Build the backend container image
+      tags: backend
       containers.podman.podman_image:
         name: treetrail-backend
+        tag: "{{ version.stdout }}"
         state: build
         force: true
         path: "{{ playbook_dir }}"
@@ -42,6 +87,7 @@
           force_rm: "{{ force_rm }}"
           cache: "{{ cache }}"
           file: Containerfile
+          extra_args: "--build-arg APP_VERSION={{ version.stdout }}"
         push: true
         push_args:
-          dest: "{{ repository }}/treetrail-backend"
+          dest: "{{ repository }}/{{ organisation }}"

pyproject.toml

@@ -1,78 +1,80 @@
 [project]
 name = "treetrail-backend"
-version = "0.3.0"
+dynamic = ["version"]
-#dynamic = ["version"]
-#dynamic = ["version"]
 description = "A fun and pedagogic tool to discover the trails and trees around"
-authors = [
+authors = [{ name = "Philippe May", email = "phil.treetrail@philome.mooo.com" }]
-    { name = "Philippe May", email = "phil.treetrail@philome.mooo.com" }
-]
 dependencies = [
-    "aiofiles",
+  "aiofiles",
-    "aiohttp-client-cache",
+  "aiohttp-client-cache",
-    "aiosqlite",
+  "aiosqlite",
-    "asyncpg",
+  "asyncpg",
-    "fastapi",
+  "fastapi",
-    "geoalchemy2",
+  "geoalchemy2",
-    "geopandas",
+  "geopandas",
-    "httptools>=0.6.1",
+  "httptools>=0.6.1",
-    "orjson",
+  "orjson",
-    "pandas",
+  "pandas",
-    "passlib[bcrypt]",
+  "passlib[bcrypt]",
-    "pillow",
+  "pillow",
-    "psycopg2-binary",
+  "psycopg2-binary",
-    "pyarrow",
+  "pyarrow>=19.0.1",
-    "pydantic-settings",
+  "pydantic-settings",
-    "python-jose[cryptography]",
+  "python-jose[cryptography]",
-    "python-multipart",
+  "python-multipart",
-    "requests",
+  "requests",
-    "sqlalchemy[asyncio]",
+  "sqlalchemy[asyncio]",
-    "sqlmodel",
+  "sqlmodel",
-    "uvicorn[standard]",
+  "uvicorn[standard]",
-    "uvloop",
+  "uvloop",
 ]
 requires-python = ">=3.11"
 readme = "README.md"
-license = {text = "MIT"}
+license = { text = "MIT" }
 classifiers = [
-    "Development Status :: 3 - Alpha",
+  "Development Status :: 3 - Alpha",
-    "Framework :: FastAPI",
+  "Framework :: FastAPI",
-    "Environment :: Web Environment",
+  "Environment :: Web Environment",
-    "Intended Audience :: Developers",
+  "Intended Audience :: Developers",
-    "License :: OSI Approved :: GNU General Public License (GPL)",
+  "License :: OSI Approved :: GNU General Public License (GPL)",
-    "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3",
-    "Operating System :: MacOS :: MacOS X",
+  "Operating System :: MacOS :: MacOS X",
-    "Operating System :: POSIX",
+  "Operating System :: POSIX",
-    "Programming Language :: Python",
+  "Programming Language :: Python",
 ]
 
 #[project.scripts]
 #treetrail-backend = "treetrail_backend:main"
 
+[dependency-groups]
+dev = ["dunamai>=1.23.0", "ipdb>=0.13.13"]
+
 [build-system]
-requires = ["hatchling"]
+requires = ["hatchling", "uv-dynamic-versioning"]
 build-backend = "hatchling.build"
 
+[tool.hatch.version]
+source = "uv-dynamic-versioning"
+
 [tool.hatch.build.targets.wheel]
 packages = ["src/treetrail"]
 
+[tool.uv-dynamic-versioning]
+style = "semver"
+
 [tool.uv]
 package = true
 dev-dependencies = [
-    "httpx",
+  "httpx",
-    "ipdb",
+  "ipdb",
-    "pandas-stubs",
+  "pandas-stubs",
-    "pytest",
+  "pytest",
-    "types-Pillow",
+  "types-Pillow",
-    "types-PyYAML",
+  "types-PyYAML",
-    "types-aiofiles",
+  "types-aiofiles",
-    "types-passlib",
+  "types-passlib",
-    "types-python-jose",
+  "types-python-jose",
-    "types-requests",
+  "types-requests",
 ]
 
-#[tool.pdm.version]
+[tool.black]
-#source = "scm"
+line-length = 98
-#write_to = "treetrail/_version.py"
-#write_template = "__version__ = '{}'"
-#

src/treetrail/__init__.py

@@ -0,0 +1,8 @@
+import importlib.metadata
+
+try:
+    from dunamai import Version, Style
+
+    __version__ = Version.from_git().serialize(style=Style.SemVer, dirty=True)
+except (ImportError, RuntimeError):
+    __version__ = importlib.metadata.version(__name__)

src/treetrail/__main__.py

@@ -0,0 +1,3 @@
+from .application import _main
+
+_main()

src/treetrail/_version.py

@@ -1 +0,0 @@
-__version__ = '0.3.0'

src/treetrail/api_v1.py

@@ -36,7 +36,8 @@ from treetrail.models import (BaseMapStyles, User, Role, Bootstrap,
                               MapStyle, Tree, Trail,
                               TreeTrail, POI, UserWithRoles, Zone,
                               VersionedComponent)
-from treetrail.config import conf, get_cache_dir, __version__
+from treetrail.config import conf, get_cache_dir
+from treetrail import __version__
 from treetrail.plantekey import get_local_details
 from treetrail.tiles import registry as tilesRegistry
 

src/treetrail/application.py

@@ -51,22 +51,7 @@ app.mount(
 def _main(argv=None):
     from argparse import ArgumentParser
     arg_parser = ArgumentParser(
-        description="fastapi Application server",
+        description="Treetrail backend / server",
-        prog="fastapi"
-    )
-    arg_parser.add_argument(
-        '--path',
-        help='Path of socket file',
-    )
-    arg_parser.add_argument(
-        "-H", "--hostname",
-        help="TCP/IP hostname to serve on (default: %(default)r)",
-        default="localhost"
-    )
-    arg_parser.add_argument(
-        "-P", "--port",
-        help="TCP/IP port to serve on",
-        type=int,
     )
     arg_parser.add_argument(
         "-c", "--create-db",
@@ -154,6 +139,11 @@ def _main(argv=None):
         help="Set debug logging",
         action="store_true"
     )
+    arg_parser.add_argument(
+        "--version",
+        help="Print version and exit",
+        action="store_true"
+    )
     args = arg_parser.parse_args()
 
     if args.debug:
@@ -161,6 +151,11 @@ def _main(argv=None):
         ## For ipdb:
         logging.getLogger('parso').setLevel(logging.WARNING)
 
+    if args.version:
+        import treetrail
+        print(treetrail.__version__)
+        sys.exit(0)
+
     if args.create_db:
         from treetrail.database import create_db
         import asyncio
@@ -233,7 +228,8 @@ def _main(argv=None):
         sys.exit(0)
 
     print(
-        'This application needs to be run with an asgi server like uvicorn.',
+        'No CLI option was given, try --help',
+        'To run the server, use an asgi server like uvicorn.',
         'For example:',
         'uvicorn application:app',
         'or:',

src/treetrail/config.py

@@ -12,8 +12,6 @@ from pydantic_settings import (
 )
 from pydantic.v1.utils import deep_update
 
-from treetrail._version import __version__
-
 
 logger = logging.getLogger(__name__)
 ENV = environ.get("env", "prod")
@@ -66,16 +64,10 @@ def get_cache_dir() -> Path:
     return Path(conf.storage.root_cache_path)
 
 
-class MyBaseSettings(BaseSettings):
+class DB(BaseSettings):
-    model_config = SettingsConfigDict(
+    model_config = SettingsConfigDict(env_prefix="treetrail_db_")
-        env_prefix="treetrail_",
-        env_nested_delimiter="_",
-    )
-
-
-class DB(MyBaseSettings):
     # uri: str
-    host: str = "treetrail-database"
+    host: str = "localhost"
     port: int = 5432
     user: str = "treetrail"
     db: str = "treetrail"
@@ -93,16 +85,19 @@ class DB(MyBaseSettings):
         return f"postgresql://{self.user}:{self.password}@{self.host}:{self.port}/{self.db}"
 
 
-class App(MyBaseSettings):
+class App(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_app_")
     title: str = "Tree Trail"
 
 
-class Storage(MyBaseSettings):
+class Storage(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_storage_")
     root_attachment_path: str = "/var/lib/treetrail/attachments"
     root_cache_path: str = "/var/lib/treetrail/cache"
 
 
-class Tiles(MyBaseSettings):
+class Tiles(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_tiles_")
     baseDir: str = "/var/lib/treetrail/mbtiles_files"
     useRequestUrl: bool = True
     spriteBaseDir: str = "/var/lib/treetrail/mbtiles_sprites"
@@ -111,7 +106,8 @@ class Tiles(MyBaseSettings):
     osmBaseDir: str = "/var/lib/treetrail/osm"
 
 
-class Map(MyBaseSettings):
+class Map(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_map_")
     zoom: float = 14.0
     pitch: float = 0.0
     lat: float = 45.8822
@@ -120,12 +116,14 @@ class Map(MyBaseSettings):
     background: str = "OpenFreeMap"
 
 
-class Geo(MyBaseSettings):
+class Geo(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_geo_")
     simplify_geom_factor: int = 10000000
     simplify_preserve_topology: bool = False
 
 
-class Security(MyBaseSettings):
+class Security(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_security_")
     """
     JWT security configuration
     """
@@ -135,12 +133,14 @@ class Security(MyBaseSettings):
     access_token_expire_minutes: float = 30
 
 
-class ExternalMapStyle(MyBaseSettings):
+class ExternalMapStyle(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_external_map_style_")
     name: str
     url: str
 
 
-class Config(MyBaseSettings):
+class Config(BaseSettings):
+    model_config = SettingsConfigDict(env_prefix="treetrail_")
 
     @classmethod
     def settings_customise_sources(
@@ -163,9 +163,9 @@ class Config(MyBaseSettings):
     tiles: Tiles = Tiles()
     security: Security = Security()
     geo: Geo = Geo()
-    version: str
+    version: str = "-"
     db: DB = DB()
     base_href: str = "/treetrail"
 
 
-conf = Config(version=__version__)  # type: ignore
+conf = Config()

src/treetrail/database.py

@@ -14,7 +14,7 @@ from treetrail.config import conf
 
 logger = logging.getLogger(__name__)
 
-CREATE_DB_TIMEOUT = 30
+CREATE_DB_TIMEOUT = 10
 
 engine = create_async_engine(
     conf.db.get_sqla_url(),
@@ -33,7 +33,7 @@ async def create_db(drop=False):
                 await conn.run_sync(SQLModel.metadata.drop_all)
             await conn.run_sync(SQLModel.metadata.create_all)
 
-    logger.debug(f'Connect to database with config: {conf.db}')
+    logger.debug(f"Connect to database with config: {conf.db}")
     while attempts > 0:
         try:
             await try_once()
@@ -68,6 +68,7 @@ async def populate_init_db():
     """Populate the database for a fresh install"""
     from sqlalchemy import text
     from treetrail.security import create_user, add_role, add_user_role
+
     logger.info("Populating initial database")
 
     user = await create_user(username="admin", password="admin")
@@ -76,7 +77,7 @@ async def populate_init_db():
     async with db_session() as session:
         for initial in initials:
             await session.execute(text(initial))
-            logger.debug(f'Added map style {initial}')
+            logger.debug(f"Added map style {initial}")
         await session.commit()
 
 

src/treetrail/utils.py

@@ -7,19 +7,19 @@ import pandas as pd
 from sqlalchemy.ext.declarative import DeclarativeMeta
 from sqlalchemy.engine.row import Row
 from sqlalchemy.sql.selectable import Select
-import geopandas as gpd # type: ignore
+import geopandas as gpd  # type: ignore
 
 from treetrail.config import conf
 
 logger = logging.getLogger(__name__)
 
+
 class AlchemyEncoder(json.JSONEncoder):
     def default(self, obj):
         if isinstance(obj.__class__, DeclarativeMeta):
             # an SQLAlchemy class
             fields = {}
-            for field in [x for x in dir(obj)
+            for field in [x for x in dir(obj) if not x.startswith("_") and x != "metadata"]:
-                          if not x.startswith('_') and x != 'metadata']:
                 data = obj.__getattribute__(field)
                 try:
                     # this will fail on non-encodable values, like other classes
@@ -50,24 +50,30 @@ def get_attachment_root(type: str):
 
 
 def get_attachment_tree_root():
-    return get_attachment_root('tree')
+    return get_attachment_root("tree")
 
 
 def get_attachment_trail_root():
-    return get_attachment_root('trail')
+    return get_attachment_root("trail")
 
 
 def get_attachment_poi_root():
-    return get_attachment_root('poi')
+    return get_attachment_root("poi")
 
 
 def pandas_query(session, query):
     return pd.read_sql_query(query, session.connection())
 
-def geopandas_query(session, query: Select, model, *,
+
-                    # simplify_tolerance: float|None=None,
+def geopandas_query(
-                    crs=None, cast=True,
+    session,
-                    ):
+    query: Select,
+    model,
+    *,
+    # simplify_tolerance: float|None=None,
+    crs=None,
+    cast=True,
+):
     ## XXX: I could not get the add_columns work without creating a subquery,
     ## so moving the simplification to geopandas - see in _get_df
     # if simplify_tolerance is not None:
@@ -78,9 +84,11 @@ def geopandas_query(session, query: Select, model, *,
     #     query = query.add_columns(new_column)
     return gpd.GeoDataFrame.from_postgis(query, session.connection(), crs=crs)
 
+
 def mkdir(dir: Path | str) -> Path:
     path = Path(dir)
     if not path.is_dir():
-        logger.info(f'Create directory {path}')
+        logger.info(f"Create directory {path}")
         path.mkdir(parents=True, exist_ok=True)
     return path
+

treetrail-kube.yaml

@@ -0,0 +1,122 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: treetrail
+  annotations:
+    io.kubernetes.cri-o.SandboxID/gisaf-backend: treetrail-cri-o
+    io.kubernetes.cri-o.SandboxID/gisaf-database: treetrail-cri-o
+    io.kubernetes.cri-o.SandboxID/gisaf-frontend: treetrail-cri-o
+    io.kubernetes.cri-o.SandboxID/gisaf-redis: treetrail-cri-o
+    io.podman.annotations.infra.name: treetrail-infra
+  labels:
+    app: treetrail
+spec:
+  ports:
+    - name: "80"
+      nodePort: 31080
+      port: 80
+      targetPort: 80
+    - name: "4532"
+      nodePort: 31432
+      port: 4532
+      targetPort: 4532
+  selector:
+    app: treetrail
+  type: NodePort
+---
+apiVersion: v1
+kind: Pod
+metadata:
+  labels:
+    app: treetrail
+  name: treetrail
+spec:
+  containers:
+    - image: code.philo.ydns.eu/philorg/treetrail-frontend:latest
+      args:
+        - nginx
+        - -g
+        - daemon off;
+      name: treetrail-frontend
+      ports:
+        - containerPort: 80
+          hostPort: 8080
+    - image: code.philo.ydns.eu/philorg/treetrail-backend:latest
+      name: treetrail-backend
+    - image: code.philo.ydns.eu/philorg/treetrail-database:latest
+      args:
+        - postgres
+      name: treetrail-database
+      ports:
+        - containerPort: 4532
+          hostPort: 15432
+      volumeMounts:
+        - mountPath: /var/lib/postgresql/data
+          name: treetrail-pgdata
+  volumes:
+    - name: treetrail-pgdata
+      persistentVolumeClaim:
+        claimName: treetrail-pgdata-pvc
+  restartPolicy: Always
+---
+apiVersion: v1
+kind: PersistentVolume
+metadata:
+  name: treetrail-pgdata-pv
+  labels:
+    type: local
+    app: postgres
+spec:
+  storageClassName: manual
+  capacity:
+    storage: 2Gi
+  accessModes:
+    - ReadWriteMany
+  hostPath:
+    path: /data/postgresql
+---
+apiVersion: v1
+kind: PersistentVolumeClaim
+metadata:
+  name: treetrail-pgdata-pvc
+spec:
+  storageClassName: manual
+  accessModes:
+    - ReadWriteMany
+  resources:
+    requests:
+      storage: 2Gi
+---
+apiVersion: networking.k8s.io/v1
+kind: Ingress
+metadata:
+  name: treetrail
+  namespace: default
+  #annotations:
+  #  kubernetes.io/ingress.class: traefik
+  #  #traefik.ingress.kubernetes.io/router.middlewares: default-strip-prefix@kubernetescrd
+spec:
+  rules:
+    - http:
+        paths:
+          - path: /treetrail
+            pathType: Prefix
+            backend:
+              service:
+                name: treetrail-frontend
+                port:
+                  number: 80
+          - path: /treetrail/v1
+            pathType: Prefix
+            backend:
+              service:
+                name: treetrail-backend
+                port:
+                  number: 8081
+          - path: /treetrail/plantekey
+            pathType: Prefix
+            backend:
+              service:
+                name: treetrail-backend
+                port:
+                  number: 8081

uv.lock

@@ -1,4 +1,5 @@
 version = 1
+revision = 1
 requires-python = ">=3.11"
 resolution-markers = [
     "python_full_version < '3.12'",
@@ -342,7 +343,7 @@ name = "click"
 version = "8.1.7"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
-    { name = "colorama", marker = "platform_system == 'Windows'" },
+    { name = "colorama", marker = "sys_platform == 'win32'" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/96/d3/f04c7bfcf5c1862a2a5b845c6b2b360488cf47af55dfa79c98f6a6bf98b5/click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de", size = 336121 }
 wheels = [
@@ -396,6 +397,18 @@ wheels = [
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 ]
 
+[[package]]
+name = "dunamai"
+version = "1.23.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "packaging" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/06/4e/a5c8c337a1d9ac0384298ade02d322741fb5998041a5ea74d1cd2a4a1d47/dunamai-1.23.0.tar.gz", hash = "sha256:a163746de7ea5acb6dacdab3a6ad621ebc612ed1e528aaa8beedb8887fccd2c4", size = 44681 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/21/4c/963169386309fec4f96fd61210ac0a0666887d0fb0a50205395674d20b71/dunamai-1.23.0-py3-none-any.whl", hash = "sha256:a0906d876e92441793c6a423e16a4802752e723e9c9a5aabdc5535df02dbe041", size = 26342 },
+]
+
 [[package]]
 name = "ecdsa"
 version = "0.19.0"
@@ -1109,6 +1122,7 @@ wheels = [
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+    { url = "https://files.pythonhosted.org/packages/08/50/d13ea0a054189ae1bc21af1d85b6f8bb9bbc5572991055d70ad9006fe2d6/psycopg2_binary-2.9.10-cp313-cp313-win_amd64.whl", hash = "sha256:27422aa5f11fbcd9b18da48373eb67081243662f9b46e6fd07c3eb46e4535142", size = 2569224 },
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 [[package]]
@@ -1131,27 +1145,37 @@ wheels = [
 
 [[package]]
 name = "pyarrow"
-version = "17.0.0"
+version = "19.0.1"
 source = { registry = "https://pypi.org/simple" }
-dependencies = [
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-    { name = "numpy" },
-]
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 [[package]]
@@ -1589,7 +1613,6 @@ wheels = [
 
 [[package]]
 name = "treetrail-backend"
-version = "0.3.0"
 source = { editable = "." }
 dependencies = [
     { name = "aiofiles" },
@@ -1618,6 +1641,7 @@ dependencies = [
 
 [package.dev-dependencies]
 dev = [
+    { name = "dunamai" },
     { name = "httpx" },
     { name = "ipdb" },
     { name = "pandas-stubs" },
@@ -1645,7 +1669,7 @@ requires-dist = [
     { name = "passlib", extras = ["bcrypt"] },
     { name = "pillow" },
     { name = "psycopg2-binary" },
-    { name = "pyarrow" },
+    { name = "pyarrow", specifier = ">=19.0.1" },
     { name = "pydantic-settings" },
     { name = "python-jose", extras = ["cryptography"] },
     { name = "python-multipart" },
@@ -1658,8 +1682,10 @@ requires-dist = [
 
 [package.metadata.requires-dev]
 dev = [
+    { name = "dunamai", specifier = ">=1.23.0" },
     { name = "httpx" },
     { name = "ipdb" },
+    { name = "ipdb", specifier = ">=0.13.13" },
     { name = "pandas-stubs" },
     { name = "pytest" },
     { name = "types-aiofiles" },